TY - JOUR
T1 - Opbp is a new architectural/insulator protein required for ribosomal gene expression
AU - Zolotarev, Nikolay
AU - Maksimenko, Oksana
AU - Kyrchanova, Olga
AU - Sokolinskaya, Elena
AU - Osadchiy, Igor
AU - Girardot, Charles
AU - Bonchuk, Artem
AU - Ciglar, Lucia
AU - Furlong, Eileen E M
AU - Georgiev, Pavel
N1 - © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.
PY - 2017/12/1
Y1 - 2017/12/1
N2 - A special class of poorly characterized architectural proteins is required for chromatin topology and enhancer-promoter interactions. Here, we identify Opbp as a new Drosophila architectural protein, interacting with CP190 both in vivo and in vitro. Opbp binds to a very restrictive set of genomic regions, through a rare sequence specific motif. These sites are co-bound by CP190 in vivo, and generally located at bidirectional promoters of ribosomal protein genes. We show that Opbp is essential for viability, and loss of opbp function, or destruction of its motif, leads to reduced ribosomal protein gene expression, indicating a functional role in promoter activation. As characteristic of architectural/insulator proteins, the Opbp motif is sufficient for distance-dependent reporter gene activation and enhancer-blocking activity, suggesting an Opbp-mediated enhancer-promoter interaction. Rather than having a constitutive role, Opbp represents a new type of architectural protein with a very restricted, yet essential, function in regulation of housekeeping gene expression.
AB - A special class of poorly characterized architectural proteins is required for chromatin topology and enhancer-promoter interactions. Here, we identify Opbp as a new Drosophila architectural protein, interacting with CP190 both in vivo and in vitro. Opbp binds to a very restrictive set of genomic regions, through a rare sequence specific motif. These sites are co-bound by CP190 in vivo, and generally located at bidirectional promoters of ribosomal protein genes. We show that Opbp is essential for viability, and loss of opbp function, or destruction of its motif, leads to reduced ribosomal protein gene expression, indicating a functional role in promoter activation. As characteristic of architectural/insulator proteins, the Opbp motif is sufficient for distance-dependent reporter gene activation and enhancer-blocking activity, suggesting an Opbp-mediated enhancer-promoter interaction. Rather than having a constitutive role, Opbp represents a new type of architectural protein with a very restricted, yet essential, function in regulation of housekeeping gene expression.
KW - Animals
KW - CRISPR-Cas Systems
KW - Chromatin/metabolism
KW - Drosophila/genetics
KW - Drosophila Proteins/chemistry
KW - Enhancer Elements, Genetic
KW - Gene Deletion
KW - Gene Expression Regulation
KW - Genes, rRNA
KW - Microtubule-Associated Proteins/metabolism
KW - Nuclear Proteins/metabolism
KW - Promoter Regions, Genetic
KW - Ribosomal Proteins/genetics
KW - Transcription Factors/chemistry
KW - Transcriptional Activation
U2 - 10.1093/nar/gkx840
DO - 10.1093/nar/gkx840
M3 - Article
C2 - 29036346
SN - 0305-1048
VL - 45
SP - 12285
EP - 12300
JO - Nucleic Acids Research
JF - Nucleic Acids Research
IS - 21
ER -